Genetic diversity of archaeological human samples from northeastern Chubut province (Argentinian Patagonia) during the Holocene (6000-200 AP)

Andrews, R. M., Kubacka, I., Chinnery, P. F., Lightowlers, R. N., Turnbull, D. M. y Howell, N. (1999). Reanalysis and revision of the Cambridge reference sequence for human mitochondrial DNA. Nature Genetics, 23(2), 147-147. https://doi.org/10.1038/13779

Dabney, J., Knapp, M., Glocke, I., Gansauge, M.-T., Weihmann, A., Nickel, B., Valdiosera, C., García, N., Pääbo, S., Arsuaga, J. L. y Meyer, M. (2013). Complete mitochondrial genome sequence of a Middle Pleistocene cave bear reconstructed from ultrashort DNA fragments. Proceedings of the National Academy of Sciences, 110(39), 15758-15763. https://doi.org/10.1073/pnas.1314445110

Daicel Arbor Biosciences (2023). MyBaits. Hybridization Capture for Targeted NGS. User Manual. Version 5.03 (June 2023). https://arborbiosci.com/wp-content/uploads/2023/06/myBaits_Manual_v5.03.pdf (Acceso: 30 de abril, 2024).

Gómez Otero, J. (2006). Dieta, uso del espacio y evolución en poblaciones cazadoras-recolectoras de la costa centro-septentrional de Patagonia durante el Holoceno medio y tardío (Tesis de Doctorado inédita). Universidad de Buenos Aires, Argentina. http://repositorio.filo.uba.ar/handle/filodigital/1274

Gómez Otero, J. y Svoboda, A. (2022). Temporal changes in the utilization of marine resources by Hunter-Gatherers of the North-Central Patagonian Atlantic coast during the Holocene. En W. E. Helbling, R. A. González, M. A. Narvarte y V. E. Villafañe (Eds.), Global change in Atlantic Coastal Patagonian Ecosystems: A journey through time (pp. 319-347). Cham: Springer. https://doi.org/10.1007/978-3-030-86676-1_13

Jónsson, H., Ginolhac, A., Schubert, M., Johnson, P. L. y Orlando, L. (2013). mapDamage2.0: Fast approximate Bayesian estimates of ancient DNA damage parameters. Bioinformatics, 29(13), 1682-1684. https://doi.org/10.1093/bioinformatics/btt193

Kieser, S., Brown, J., Zdobnov, E. M., Trajkovski, M. y McCue, L. A. (2020). ATLAS: A Snakemake workflow for assembly, annotation, and genomic binning of metagenome sequence data. BMC bioinformatics, 21, 257. https://doi.org/10.1186/s12859-020-03585-4

Li, H. y Durbin, R. (2009). Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics, 25(14), 1754-1760. https://doi.org/10.1093/bioinformatics/btp324

Meyer, M. y Kircher, M. (2010). Illumina sequencing library preparation for highly multiplexed target capture and sequencing. Cold Spring Harbor Protocols, 6, pdb-prot5448. https://doi.org/10.1101/pdb.prot5448

Millán, A. G. y Dahinten, S. L. (2019). La Colección Bioantropológica del norte de Chubut (Secretaría de Cultura de Chubut/IDEAUS-CONICET): Integración, conservación e investigación. En J. Gómez Otero, A. Svodoba y A. Banegas (Eds.), Arqueología de la Patagonia: El pasado en las arenas (pp. 205-213). Puerto Madryn: Instituto de Diversidad y Evolución Austral (IDEAus), Centro Nacional Patagónico (CENPAT), Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET). https://ri.conicet.gov.ar/handle/11336/134956

Renaud, G., Slon, V., Duggan, A. T. y Kelso, J. (2015). Schmutzi: Estimation of contamination and endogenous mitochondrial consensus calling for ancient DNA. Genome Biology, 16, 224. https://doi.org/10.1186/s13059-015-0776-0

Rohland, N., & Hofreiter, M. (2007). Ancient DNA extraction from bones and teeth. Nature protocols, 2, 1756-1762. https://doi.org/10.1038/nprot.2007.247

Tamburrini, C., Dahinten, S. L., Romero Saihueque, R. R., Ávila-Arcos, M. C. y Parolin, M. L. (2023a). Towards an ethical and legal framework in archaeogenomics: A local case in the Atlantic coast of central Patagonia. American Journal of Biological Anthropology, 182(2), 161-176. https://doi.org/10.1002/ajpa.24821

Tamburrini, C., Romero Saihueque, R. R., Dahinten, S. L. y Parolin, M. L. (2023b). Comunicación del taller: Ciencias genómicas y saberes de los pueblos originarios (Provincia del Chubut, Argentina). Revista del Museo de Antropología, 16(3), 79-92. https://doi.org/10.31048/1852.4826.v16.n2.39239

van Oven, M. y Kayser, M. (2009). Updated comprehensive phylogenetic tree of global human mitochondrial DNA variation. Human Mutation, 30(2), E386-E394. https://doi.org/10.1002/humu.20921

Weissensteiner, H., Pacher, D., Kloss-Brandstätter, A., Forer, L., Specht, G., Bandelt, H.-J., Kronenberg, F., Salas, A. y Schönherr, S. (2016). HaploGrep 2: Mitochondrial haplogroup classification in the era of high-throughput sequencing. Nucleic acids research, 44(W1), W58-W63. https://doi.org/10.1093/nar/gkw233